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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20861216_20873386_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20861216 - 20873386
Intron Length:
12171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
CGTTAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
CTGACGTTAATT
Flanking Amino Acid:
ARSSGDGTEWGVNRTKLHDM
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
76.8
0.6
0.9
69
40.7
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
54.3
0.21
2.1
72.09
45.3

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017361
20832853 - 20890526
57674