Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20861216_20878611_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20861216 - 20878611

Intron Length:

17396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCTTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

CTTAAAGTAACT

Flanking Amino Acid:

ARSSGDGTEWAEPITFPSGG

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.9

Major BPS

73.9

0.59

30.2

Major PPT

85.1

0.79

0.7

81.4

30.6

Minor 5ss

37.8

-1.4

42.6

44.5

Minor BPS

45.6

-0.2

2.4

70.98

45.3

Associated Gene:

Gene:

STRN3

Ensembl Gene ID:

ENSAPLG00000016038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039208

20832853 - 20890526

57674