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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20884780_20884910_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20884780 - 20884910
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCATTTAATG
Flanking Amino Acid:
WNLQKTVPAKKSASLDVEPI
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1.1
87.1
27.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
30.7
-2.2
3.9
42.6
38.4
Minor BPS
64.3
0.31
1.5
69.74
37.7

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039208
20832853 - 20890526
57674
ENSAPLT00000017361
20832853 - 20890526
57674
ENSAPLT00000016764
20832853 - 20890526
57674