About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20887838_20888113_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20887838 - 20888113
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATTCTTTCACT
Flanking Amino Acid:
PCICTYNGEKEHGIPTSVDF
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.5
0.71
0.8
73.8
36.5
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
68.7
0.67
1.7
83.43
37.5

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017361
20832853 - 20890526
57674
ENSAPLT00000016764
20832853 - 20890526
57674
ENSAPLT00000039208
20832853 - 20890526
57674