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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20889769_20890100_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20889769 - 20890100
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ACTTGTTTATTT
Flanking Amino Acid:
RHIKFFDNKTGKMIHSMVAH
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.7
0.69
0.8
78.4
35.6
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
49.8
0.07
2
69.31
42.7

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039208
20832853 - 20890526
57674
ENSAPLT00000017361
20832853 - 20890526
57674
ENSAPLT00000016764
20832853 - 20890526
57674