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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20890188_20890324_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20890188 - 20890324
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TTTTCCCCAAAT
Flanking Amino Acid:
DPNGIYLMSGSHDCSIRLWN
Intron Amino Acid Position:
772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
75.8
34
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
67.2
0.39
0.9
63.6
31.7
Minor 5ss
35.5
-1.6
3.7
50
41
Minor BPS
61.5
0.44
2
87
37.9

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017361
20832853 - 20890526
57674
ENSAPLT00000016764
20832853 - 20890526
57674
ENSAPLT00000039208
20832853 - 20890526
57674