Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20901916_20903334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20901916 - 20903334

Intron Length:

1419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTGTTTTCAAAC

Flanking Amino Acid:

MVQDIGFVDKAVCRNNGFFS

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.1

29.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

74.3

0.55

70.8

Minor 5ss

31.5

-2.1

3.4

38.4

40.9

Minor BPS

56.2

0.17

1.6

67.18

38.6

Associated Gene:

Gene:

COCH

Ensembl Gene ID:

ENSAPLG00000015813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016508

20900472 - 20918167

17696