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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20903562_20904325_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20903562 - 20904325
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTCAAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTATTCAAAACT
Flanking Amino Acid:
LGFRGGNSNTGKALKHTAQK
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
57.9
0.18
1
50.8
41.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
51.4
0.12
2
73.1
43.7

Associated Gene:

Gene:
COCH
Ensembl Gene ID:
ENSAPLG00000015813
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016508
20900472 - 20918167
17696