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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20904430_20904956_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20904430 - 20904956
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GGTTTATTAATG
Flanking Amino Acid:
EGPHIGVVQASEHPKIEFYL
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
58.2
0.12
1.7
61.87
40

Associated Gene:

Gene:
COCH
Ensembl Gene ID:
ENSAPLG00000015813
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016508
20900472 - 20918167
17696