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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20905105_20905192_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20905105 - 20905192
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
TGGATGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTCTAATTATTT
Flanking Amino Acid:
KPLDKKAGNKDCKADIAFLV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.9
0.45
1
62
44.3
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
47.3
-0.1
2
66.9
43.7

Associated Gene:

Gene:
COCH
Ensembl Gene ID:
ENSAPLG00000015813
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016508
20900472 - 20918167
17696