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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20905238_20906041_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20905238 - 20906041
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTT
5'SS Class:
major
3'SS Sequence:
TCCTTCATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAAAT
Flanking Amino Acid:
RSVSTARPSTGKRPKKPLDK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
72.5
37.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.1
0.48
1
71.9
31.5
Minor 5ss
34.6
-1.7
3.8
55.8
48.4
Minor BPS
71.1
0.74
1.4
80.5
41.5

Associated Gene:

Gene:
COCH
Ensembl Gene ID:
ENSAPLG00000015813
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016508
20900472 - 20918167
17696