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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20906588_20912695_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20906588 - 20912695
Intron Length:
6108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TTCATCACAACT
Flanking Amino Acid:
LSSVCGAAIHRGVITNAGGP
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
78.2
0.63
0.9
76.1
37.8
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
50.4
0.09
1.9
73.73
42.8

Associated Gene:

Gene:
COCH
Ensembl Gene ID:
ENSAPLG00000015813
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016508
20900472 - 20918167
17696