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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20957415_20958542_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20957415 - 20958542
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTTACAATA
Flanking Amino Acid:
FDPKMLRGSDSSVPRNKNPF
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.9
0.63
0.9
75.5
33
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
54
0.12
1.8
71.85
34.3

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039888
20951799 - 20994631
42833
ENSAPLT00000016207
20951799 - 20994631
42833