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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20965893_20966870_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20965893 - 20966870
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CACTTTGTAATT
Flanking Amino Acid:
YISSTQAPSEIDLEQYKKAL
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.1
0.72
0.9
78.9
38.5
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
48.4
-0
2
63.33
42.2

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039888
20951799 - 20994631
42833
ENSAPLT00000016207
20951799 - 20994631
42833