Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20970707_20977312_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20970707 - 20977312

Intron Length:

6606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATTG

5'SS Class:

strong_major

3'SS Sequence:

TACTCTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

TTACTCTTAAAC

Flanking Amino Acid:

VATAVLEHIKARKLDVYFEY

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

72.5

39.9

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

69.9

0.45

66.2

38.4

Minor 5ss

40.2

-1.1

3.4

55.2

Minor BPS

68.3

0.55

1.4

74.09

35.7

Associated Gene:

Gene:

SCFD1

Ensembl Gene ID:

ENSAPLG00000015536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039888

20951799 - 20994631

42833

ENSAPLT00000016207

20951799 - 20994631

42833