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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20978055_20978379_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20978055 - 20978379
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATCAAAACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTCATCAAAA
Flanking Amino Acid:
DEVKRLKSIMGIEGEDEGAI
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
57.7
0.17
1.1
49.8
41.9
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
51.7
0.05
1.9
66.7
38.5

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039888
20951799 - 20994631
42833
ENSAPLT00000016207
20951799 - 20994631
42833