About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20979489_20982783_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20979489 - 20982783
Intron Length:
3295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
TYQALVHDVLDFHLNRVNLE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016207
20951799 - 20994631
42833