About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20980895_20982783_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20980895 - 20982783
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TACACATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GTAATTTGAAAT
Flanking Amino Acid:
TYQALVHDVLTCMQRSPFPT
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
61.5
0.26
1
54.2
39.2
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
48.9
-0
1.5
64.51
39.2

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039888
20951799 - 20994631
42833