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Intron Name: Anas_platyrhynchos_platyrhynchos_5_20982884_20984713_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20982884 - 20984713

Intron Length:

1830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTGT

5'SS Class:

strong_major

3'SS Sequence:

GTCATCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

ACGTGTTTAAAG

Flanking Amino Acid:

TGDTLGAGQFSFQRPLLVLV

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

72.1

39.9

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

80.2

0.68

0.9

76.8

37.2

Minor 5ss

44.5

-0.6

3.2

64.5

46.9

Minor BPS

47.9

-0.2

1.9

50.25

44.2

Associated Gene:

Gene:

SCFD1

Ensembl Gene ID:

ENSAPLG00000015536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016207

20951799 - 20994631

42833

ENSAPLT00000039888

20951799 - 20994631

42833