About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20988241_20989436_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20988241 - 20989436
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TGTTCCTTGATT
Flanking Amino Acid:
GANAVTQVAKVFDQYLNFIT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
74.5
0.55
0.9
65.7
40
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
83.7
1.14
1
92.07
30.3

Associated Gene:

Gene:
SCFD1
Ensembl Gene ID:
ENSAPLG00000015536
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039888
20951799 - 20994631
42833
ENSAPLT00000016207
20951799 - 20994631
42833