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Intron Name: Anas_platyrhynchos_platyrhynchos_5_20989560_20990185_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20989560 - 20990185

Intron Length:

626

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TAATCAGGAAAA

Flanking Amino Acid:

TEENIDRMCQDLRNQLYESY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

78.2

0.7

77.9

32.1

Major PPT

82.5

0.73

0.7

81.2

30.9

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

42.6

-0.5

2.3

57.54

40.7

Associated Gene:

Gene:

SCFD1

Ensembl Gene ID:

ENSAPLG00000015536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039888

20951799 - 20994631

42833

ENSAPLT00000016207

20951799 - 20994631

42833