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Intron Name: Anas_platyrhynchos_platyrhynchos_5_20992114_20994600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20992114 - 20994600

Intron Length:

2487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

TCTACTTTATTT

Flanking Amino Acid:

MAAGIREKQTVALKRMLNFN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

75.1

0.62

65.6

Major PPT

88.3

0.86

0.7

80.5

36.7

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

61.3

0.43

1.6

76.03

41.4

Associated Gene:

Gene:

SCFD1

Ensembl Gene ID:

ENSAPLG00000015536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039888

20951799 - 20994631

42833

ENSAPLT00000016207

20951799 - 20994631

42833