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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20998977_20999780_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20998977 - 20999780
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATGATCTAATT
Flanking Amino Acid:
FWMGYLQDVESGESVVTLED
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
48.9
-0
1.9
70.63
40.5

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584