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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21001359_21001901_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21001359 - 21001901
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
GCTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTGCTTCATT
Flanking Amino Acid:
SAKNLSLDLQALKENLYFEA
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
80.9
0.69
0.9
77.3
35.9
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
63.3
0.5
2.2
87.41
38.9

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584