About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21002213_21003384_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21002213 - 21003384
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
AATTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAGGTTTCAACT
Flanking Amino Acid:
MSNSNWSLRKKQLRTQRREV
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
74.6
36.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.8
0.69
0.8
78.6
35
Minor 5ss
46.8
-0.3
3
66.8
38.5
Minor BPS
53.1
0.17
1.6
68.45
42.9

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584