About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21003511_21004179_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21003511 - 21004179
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGTGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTAAAAT
Flanking Amino Acid:
QSPGSQHSFLQSPKIICQNN
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1
69.8
35.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.7
0.8
0.7
80.8
31.3
Minor 5ss
40.2
-1.1
2.8
56
42.5
Minor BPS
51.5
0.12
1.8
68.86
42.4

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584