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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21005955_21007092_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21005955 - 21007092
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TACCCTGACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCCTGACA
Flanking Amino Acid:
NAWFHRECLQYQALSAGIFF
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
63.1
0.3
1
56.9
37.5
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
66.8
0.52
1.7
80.65
34.3

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584