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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21008434_21008940_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21008434 - 21008940
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAA
Flanking Amino Acid:
RKEVNRAAKLKCNICKKKGA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78
0.63
0.9
70
40.6
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
68.2
0.57
1.4
76.88
33.6

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584