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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21010790_21012353_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21010790 - 21012353
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGCTCCTAACCA
Flanking Amino Acid:
SESNFDIQSPSCVLCGWTDN
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.6
0.73
0.8
81.4
36.1
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
54.5
0.14
2
67.6
44.9

Associated Gene:

Gene:
G2E3
Ensembl Gene ID:
ENSAPLG00000015236
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015901
20997356 - 21013939
16584