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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2104397_2105192_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2104397 - 2105192
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TTGCTCCTCACA
Flanking Amino Acid:
DEEFIVVSCQCAGKELKAVV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
78.4
0.64
0.8
72.5
32.3
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
47.9
-0.1
2.1
64.98
41.4

Associated Gene:

Gene:
NRIP3
Ensembl Gene ID:
ENSAPLG00000003345
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003404
2097245 - 2107811
10567