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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2107312_2107557_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2107312 - 2107557
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAATGTTTAAAT
Flanking Amino Acid:
VRVECAALVVEDNEKSFSFG
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
52.7
0.16
1.9
68.24
42.1

Associated Gene:

Gene:
NRIP3
Ensembl Gene ID:
ENSAPLG00000003345
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003404
2097245 - 2107811
10567