About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2107611_2107709_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2107611 - 2107709
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATTCTTTACA
Flanking Amino Acid:
FGLQTLKSLKCVINMEKHQL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
89.2
0.88
0.7
84.2
30.5
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
71
0.66
1.6
79.75
35.8

Associated Gene:

Gene:
NRIP3
Ensembl Gene ID:
ENSAPLG00000003345
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003404
2097245 - 2107811
10567