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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21084669_21087178_F

Intron Information:

Intron Rank:
128902
Intron Class:
major
Intron Phase:
Intron Coordinates:
21084669 - 21087178
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTACTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.7
78.1
30.5
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
63.9
0.42
1.6
73.48
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035092
21079350 - 21087692
8343