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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21223171_21227015_F

Intron Information:

Intron Rank:
147055
Intron Class:
major
Intron Phase:
Intron Coordinates:
21223171 - 21227015
Intron Length:
3845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTGGGTAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
39.9
-0.6
2.1
58.6
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029189
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024078
21221332 - 21227355
6024