About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21231774_21242826_R

Intron Information:

Intron Rank:
131941
Intron Class:
major
Intron Phase:
Intron Coordinates:
21231774 - 21242826
Intron Length:
11053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCTACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGGCCTCACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72.5
0.51
0.9
70.1
34.8
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
46.8
-0.2
2
60.62
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018204
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036535
21230981 - 21247717
16737