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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21244032_21247461_R

Intron Information:

Intron Rank:
131943
Intron Class:
major
Intron Phase:
Intron Coordinates:
21244032 - 21247461
Intron Length:
3430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATTCTACCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
63.8
40.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
37.7
-1.4
2.9
51.8
38.4
Minor BPS
44.9
-0.3
2.2
66.11
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018204
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036535
21230981 - 21247717
16737