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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21271308_21313686_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21271308 - 21313686
Intron Length:
42379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAAA
5'SS Class:
major
3'SS Sequence:
TTTGTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGTATTTACA
Flanking Amino Acid:
MPAVPWFPECGFYGMY
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.5
34.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
34
-1.8
2.8
33.4
42
Minor BPS
52.2
0.06
2
71.92
39.8

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042332
21271290 - 21373696
102407