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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21313826_21334652_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21313826 - 21334652
Intron Length:
20827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTTGGAATA
Flanking Amino Acid:
EGDLVEVVLSASATFEDFQI
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
47.8
-0.1
2
63.99
36.9

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032535
21248266 - 21369986
121721
ENSAPLT00000024900
21248266 - 21373696
125431
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000042332
21271290 - 21373696
102407