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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21329167_21334652_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21329167 - 21334652
Intron Length:
5486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAA
5'SS Class:
major
3'SS Sequence:
CTTGTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTTGGAATA
Flanking Amino Acid:
LTESSSLIIKASATFEDFQI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.2
37.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
47.8
-0.1
2
63.99
36.9

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020768
21329055 - 21390833
61779