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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21334785_21335857_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21334785 - 21335857
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTCTTTACAG
Flanking Amino Acid:
GLVRQGLKCEGCGLNYHKRC
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88.8
0.87
0.7
83.3
25.1
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
56.8
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024900
21248266 - 21373696
125431
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000042332
21271290 - 21373696
102407
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000032535
21248266 - 21369986
121721