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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2133953_2137312_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2133953 - 2137312
Intron Length:
3360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TAACTATTGATT
Flanking Amino Acid:
QLIQSDEDIGDHQPFANAHD
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82
0.72
0.9
73.4
41.9
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
50
0.08
1.6
66.98
37.3

Associated Gene:

Gene:
TMEM9B
Ensembl Gene ID:
ENSAPLG00000003457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003518
2128862 - 2137468
8607