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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21352296_21354493_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21352296 - 21354493
Intron Length:
2198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACCTT
5'SS Class:
major
3'SS Sequence:
ATTTATTCTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
PDHDESSRMISPSTSNNIPL
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
71.2
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
1.1
76.7
36.8
Minor 5ss
37.7
-1.4
3.4
55.8
48.4
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000042332
21271290 - 21373696
102407
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000032535
21248266 - 21369986
121721
ENSAPLT00000024900
21248266 - 21373696
125431