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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21354618_21355401_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21354618 - 21355401
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCCCCTATTT
Flanking Amino Acid:
MVHYTSKDTLRKRHYWRLDS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.7
85.9
26.9
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
51.5
0.12
2
74.09
42.9

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024900
21248266 - 21373696
125431
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000042332
21271290 - 21373696
102407
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000032535
21248266 - 21369986
121721