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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21356734_21359248_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21356734 - 21359248
Intron Length:
2515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TATATTTTACTT
Flanking Amino Acid:
ASAGSGPSLHRDISISISVS
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
83.8
0.76
0.7
76.8
31.9
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
56.3
0.28
1.6
72.89
38.6

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000032535
21248266 - 21369986
121721
ENSAPLT00000024900
21248266 - 21373696
125431
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000042332
21271290 - 21373696
102407