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Intron Name: Anas_platyrhynchos_platyrhynchos_5_21359302_21359894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21359302 - 21359894

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTATATGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTATATGAACA

Flanking Amino Acid:

VSNCQVQENVDISTVYQIFP

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.8

83.1

28.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

70.5

0.46

1.1

66.6

Minor 5ss

33.3

-1.9

3.4

45.9

43.7

Minor BPS

57.8

0.24

1.8

74.32

36.5

Associated Gene:

Gene:

PRKD1

Ensembl Gene ID:

ENSAPLG00000014715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015405

21248266 - 21390833

142568

ENSAPLT00000032535

21248266 - 21369986

121721

ENSAPLT00000024900

21248266 - 21373696

125431

ENSAPLT00000020768

21329055 - 21390833

61779

ENSAPLT00000020094

21248266 - 21373696

125431

ENSAPLT00000042332

21271290 - 21373696

102407