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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21360974_21361397_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21360974 - 21361397
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTACCCTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACCCTTAATA
Flanking Amino Acid:
QLRNEVAILQNLHHPGVVNL
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
70.2
0.45
0.9
66.4
34.1
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
79.9
0.94
1.1
82.11
32.3

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000042332
21271290 - 21373696
102407
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000032535
21248266 - 21369986
121721
ENSAPLT00000024900
21248266 - 21373696
125431