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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21364463_21369563_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21364463 - 21369563
Intron Length:
5101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTAACTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTGCTTATTT
Flanking Amino Acid:
PNPWKEISHEGTSDNSKLCW
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
55.3
0.12
1.1
58.4
40.8
Minor 5ss
34.7
-1.7
3.2
49.7
46.1
Minor BPS
58.9
0.36
2
79.35
43.5

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032535
21248266 - 21369986
121721