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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21364463_21371443_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21364463 - 21371443
Intron Length:
6981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATATTTTAACT
Flanking Amino Acid:
PNPWKEISHEAIDLINNLLQ
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
39
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.6
0.85
0.7
85.2
29.1
Minor 5ss
34.7
-1.7
3.2
49.7
46.1
Minor BPS
75.1
0.87
1.2
85.48
34.3

Associated Gene:

Gene:
PRKD1
Ensembl Gene ID:
ENSAPLG00000014715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024900
21248266 - 21373696
125431
ENSAPLT00000020768
21329055 - 21390833
61779
ENSAPLT00000020094
21248266 - 21373696
125431
ENSAPLT00000015405
21248266 - 21390833
142568
ENSAPLT00000042332
21271290 - 21373696
102407