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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_21712811_21713751_R

Intron Information:

Intron Rank:
132604
Intron Class:
major
Intron Phase:
Intron Coordinates:
21712811 - 21713751
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGAATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
74.1
35
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
60.2
0.32
1.5
67.54
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026668
21710810 - 21714034
3225