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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2223337_2241496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2223337 - 2241496
Intron Length:
18160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTGTTTTAACT
Flanking Amino Acid:
GSKVPQDTLDRKSFEFEDAS
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.2
0.66
0.9
75.6
38.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
73.9
0.83
1.3
85.39
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026289
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045801
2221791 - 2260181
38391